Structure

InChI Key GSOSVVULSKVSLQ-JJVRHELESA-N
Smiles C[C@@H](O)[C@H]1C(=O)N2C(C(=O)O)=C(SCCNC=N)C[C@H]12.O
InChI
InChI=1S/C12H17N3O4S.H2O/c1-6(16)9-7-4-8(20-3-2-14-5-13)10(12(18)19)15(7)11(9)17;/h5-7,9,16H,2-4H2,1H3,(H2,13,14)(H,18,19);1H2/t6-,7-,9-;/m1./s1

Physicochemical Descriptors

Property Name Value
Molecular Formula C12H17N3O4S
Molecular Weight 299.35
AlogP -0.18
Hydrogen Bond Acceptor 5.0
Hydrogen Bond Donor 4.0
Number of Rotational Bond 7.0
Polar Surface Area 113.72
Molecular species ZWITTERION
Aromatic Rings 0.0
Heavy Atoms 20.0

Bioactivity

Mechanism of Action Action Reference
Bacterial penicillin-binding protein inhibitor INHIBITOR DailyMed
Targets EC50(nM) IC50(nM) Kd(nM) Ki(nM) Inhibition(%)
Enzyme Hydrolase
- 150 - 60 -
Ion channel Ligand-gated ion channel GABA-A receptor
- - - - 15
Assay Description Organism Bioactivity Reference
Inhibitory concentration against purified penicillin-binding protein(PBP) 1bgamma of Escherichia coli Escherichia coli 10.0 nM
In vitro binding affinity towards PBP2'' of Staphylococcus aureus using [14C]benzylpenicillin as radioligand Staphylococcus aureus 430.0 ug.mL-1
Binding affinity against PBP2a receptor by competition analysis with [3H]benzylpenicillin using cell membrane fractions from the MRSA COL strain. Staphylococcus aureus 100.0 ug.mL-1
Antibacterial activity expressed as binding to PBP 1a of Pseudomonas aeruginosa Pseudomonas aeruginosa 300.0 nM
Antibacterial activity expressed as binding to PBP 1b of Pseudomonas aeruginosa Pseudomonas aeruginosa 600.0 nM
Antibacterial activity expressed as binding to PBP 2 of Pseudomonas aeruginosa Pseudomonas aeruginosa 600.0 nM
Antibacterial activity expressed as binding to PBP 4 of Pseudomonas aeruginosa Pseudomonas aeruginosa 100.0 nM
Binding affinity towards Penicillin-binding protein 2a from homogeneous MRSA COL strain using [3H]-radioligand Staphylococcus aureus 128.0 ug.mL-1
Compound was tested for its binding affinity towards Penicillin-binding protein 2a (PBP2a) using [13H]-benzylpenicillin None 188.0 ug.mL-1
Compound was tested for its binding affinity against PBP2' receptor in Staphylococcus aureus. Staphylococcus aureus 430.0 ug.mL-1
Compound was tested for its binding affinity against PBP2'' receptor in Staphylococcus aureus. Values taken from literature. Staphylococcus aureus 220.0 ug.mL-1
PBP-2'' affinity was determined by the competition assay with [14C]benzylpenicillin using membrane isolated from MRSA BB6294 strain Staphylococcus aureus 125.0 ug.mL-1
Inhibitory concentration against purified PBP2x from Streptococcus pneumoniae Streptococcus pneumoniae 500.0 nM
Inhibitory concentration against purified cephalosporin-resistant PBP2x.505 from Streptococcus pneumoniae Streptococcus pneumoniae 500.0 nM
Inhibition of Enterococcus faecium LD-transpeptidase assessed by formation of Ac2-L-Lys-D-[14C]Ala from Ac2-L-Lys-D-Ala and D-[14C]Ala Enterococcus faecium 0.077 ug.mL-1
Inhibition of Citrobacter freundii PER2 beta lactamase Citrobacter freundii 60.0 nM
Inhibition of bocillin FL binding to Pseudomonas aeruginosa PAO1 penicillin-binding protein 1b Pseudomonas aeruginosa PAO1 0.5 ug.mL-1
Inhibition of bocillin FL binding to Pseudomonas aeruginosa PAO1 penicillin-binding protein 1a Pseudomonas aeruginosa PAO1 0.5 ug.mL-1
Inhibition of bocillin FL binding to Escherichia coli MC4100 penicillin-binding protein 6 Escherichia coli 0.1 ug.mL-1
Inhibition of bocillin FL binding to Escherichia coli MC4100 penicillin-binding protein 5 Escherichia coli 0.5 ug.mL-1
Inhibition of bocillin FL binding to Escherichia coli MC4100 penicillin-binding protein 4 Escherichia coli 0.01 ug.mL-1
Inhibition of bocillin FL binding to Escherichia coli MC4100 penicillin-binding protein 3 Escherichia coli 8.0 ug.mL-1
Inhibition of bocillin FL binding to Escherichia coli MC4100 penicillin-binding protein 2 Escherichia coli 0.01 ug.mL-1
Inhibition of bocillin FL binding to Escherichia coli MC4100 penicillin-binding protein 1b Escherichia coli 0.5 ug.mL-1
Inhibition of bocillin FL binding to Escherichia coli MC4100 penicillin-binding protein 1a Escherichia coli 0.5 ug.mL-1
Inhibition of bocillin FL binding to Pseudomonas aeruginosa PAO1 penicillin-binding protein 2 Pseudomonas aeruginosa PAO1 0.1 ug.mL-1
Inhibition of bocillin FL binding to Pseudomonas aeruginosa PAO1 penicillin-binding protein 3 Pseudomonas aeruginosa PAO1 0.1 ug.mL-1
Inhibition of bocillin FL binding to Pseudomonas aeruginosa PAO1 penicillin-binding protein 4 Pseudomonas aeruginosa PAO1 0.01 ug.mL-1
Inhibition of bocillin FL binding to Pseudomonas aeruginosa PAO1 penicillin-binding protein 5/6 Pseudomonas aeruginosa PAO1 2.0 ug.mL-1
Inhibition of Pseudomonas aeruginosa GES-13 beta lactamase Pseudomonas aeruginosa 150.0 nM
Inhibition of Bocillin FL binding to PBP1A in Escherichia coli MC4100 membranes Escherichia coli 0.5 ug.mL-1
Inhibition of Bocillin FL binding to PBP1B in Escherichia coli MC4100 membranes Escherichia coli 0.4 ug.mL-1
Inhibition of Bocillin FL binding to PBP2 in Escherichia coli MC4100 membranes Escherichia coli 0.008 ug.mL-1
Inhibition of Bocillin FL binding to PBP3 in Escherichia coli MC4100 membranes Escherichia coli 8.0 ug.mL-1
Inhibition of Bocillin FL binding to PBP4 in Escherichia coli MC4100 membranes Escherichia coli 0.01 ug.mL-1
Inhibition of Bocillin FL binding to PBP5 in Escherichia coli MC4100 membranes Escherichia coli 0.4 ug.mL-1
Inhibition of Bocillin FL binding to PBP6 in Escherichia coli MC4100 membranes Escherichia coli 0.1 ug.mL-1
Inhibition of Bocillin FL binding to PBP1A in Pseudomonas aeruginosa PAO1 membranes Pseudomonas aeruginosa PAO1 0.1 ug.mL-1
Inhibition of Bocillin FL binding to PBP1B in Pseudomonas aeruginosa PAO1 membranes Pseudomonas aeruginosa PAO1 0.2 ug.mL-1
Inhibition of Bocillin FL binding to PBP2 in Pseudomonas aeruginosa PAO1 membranes Pseudomonas aeruginosa PAO1 0.1 ug.mL-1
Inhibition of Bocillin FL binding to PBP3 in Pseudomonas aeruginosa PAO1 membranes Pseudomonas aeruginosa PAO1 0.09 ug.mL-1
Inhibition of Bocillin FL binding to PBP4 in Pseudomonas aeruginosa PAO1 membranes Pseudomonas aeruginosa PAO1 0.008 ug.mL-1
Inhibition of Bocillin FL binding to PBP5/6 in Pseudomonas aeruginosa PAO1 membranes Pseudomonas aeruginosa PAO1 2.0 ug.mL-1
Inhibition of Bocillin FL binding to PBP1A in Pseudomonas aeruginosa 27853 membranes Pseudomonas aeruginosa PAO1 0.1 ug.mL-1
Inhibition of Bocillin FL binding to PBP1B in Pseudomonas aeruginosa 27853 membranes Pseudomonas aeruginosa PAO1 0.1 ug.mL-1
Inhibition of Bocillin FL binding to PBP2 in Pseudomonas aeruginosa 27853 membranes Pseudomonas aeruginosa PAO1 0.1 ug.mL-1
Inhibition of Bocillin FL binding to PBP3 in Pseudomonas aeruginosa 27853 membranes Pseudomonas aeruginosa PAO1 0.3 ug.mL-1
Inhibition of Bocillin FL binding to PBP4 in Pseudomonas aeruginosa 27853 membranes Pseudomonas aeruginosa PAO1 0.008 ug.mL-1
Inhibition of Bocillin FL binding to PBP5/6 in Pseudomonas aeruginosa 27853 membranes Pseudomonas aeruginosa PAO1 1.0 ug.mL-1
Inhibition of VIM-1 activity in Escherichia coli extracts at 100 uM Escherichia coli 95.0 %
Binding affinity to PBP2a in methicillin-resistant Staphylococcus aureus 123-1 by [14C]benzylpenicillin labelled competitive assay Staphylococcus aureus 170.0 ug.mL-1
Binding affinity to PBP2a in methicillin-resistant Staphylococcus aureus 12386-1 by [14C]benzylpenicillin labelled competitive assay Staphylococcus aureus 76.0 ug.mL-1
Antibacterial activity against Staphylococcus aureus ATCC 6538P by microdilution method Staphylococcus aureus 0.008 ug.mL-1
Antibacterial activity against Escherichia coli NIHJ by microdilution method Escherichia coli 0.25 ug.mL-1
Antibacterial activity against Pseudomonas aeruginosa ATCC 15692 by microdilution method Pseudomonas aeruginosa 1.0 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP1 in Staphylococcus aureus ATCC 6538P Staphylococcus aureus 0.024 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP2 Staphylococcus aureus ATCC 6538P Staphylococcus aureus 0.047 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP3 in Staphylococcus aureus ATCC 6538P Staphylococcus aureus 0.049 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP4 in Staphylococcus aureus ATCC 6538P Staphylococcus aureus 0.0078 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP1A in Escherichia coli NIHJ Escherichia coli 0.22 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP1B in Escherichia coli NIHJ Escherichia coli 1.1 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP2 in Escherichia coli NIHJ Escherichia coli 0.045 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP3 in Escherichia coli NIHJ Escherichia coli 19.0 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP4 in Escherichia coli NIHJ Escherichia coli 0.44 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP5 in Escherichia coli NIHJ Escherichia coli 0.34 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP6 Escherichia coli NIHJ Escherichia coli 1.0 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP1A in Pseudomonas aeruginosa ATCC 15692 Pseudomonas aeruginosa 0.057 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP1B in Pseudomonas aeruginosa ATCC 15692 Pseudomonas aeruginosa 0.078 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP2 in Pseudomonas aeruginosa ATCC 15692 Pseudomonas aeruginosa 0.066 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP3 in Pseudomonas aeruginosa ATCC 15692 Pseudomonas aeruginosa 0.089 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP4 in Pseudomonas aeruginosa ATCC 15692 Pseudomonas aeruginosa 0.0032 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP 5 in Pseudomonas aeruginosa ATCC 15692 Pseudomonas aeruginosa 0.19 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP 6 in Pseudomonas aeruginosa ATCC 15692 Pseudomonas aeruginosa 0.19 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 24 PBP1A Streptococcus pneumoniae 0.441 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3413 PBP1A Streptococcus pneumoniae 0.62 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 2527 PBP1A Streptococcus pneumoniae 0.042 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3676 PBP1A Streptococcus pneumoniae 0.251 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3243 PBP1A Streptococcus pneumoniae 0.182 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3665 PBP1A Streptococcus pneumoniae 0.289 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3009 PBP1A Streptococcus pneumoniae 0.026 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 1076 PBP1A Streptococcus pneumoniae 0.09 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 1077 PBP1A Streptococcus pneumoniae 0.052 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 24 PBP1B Streptococcus pneumoniae 0.71 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3413 PBP1B Streptococcus pneumoniae 0.316 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 2527 PBP1B Streptococcus pneumoniae 0.023 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3676 PBP1B Streptococcus pneumoniae 0.182 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3243 PBP1B Streptococcus pneumoniae 0.108 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3665 PBP1B Streptococcus pneumoniae 0.077 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3009 PBP1B Streptococcus pneumoniae 0.009 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 1076 PBP1B Streptococcus pneumoniae 0.031 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 1077 PBP1B Streptococcus pneumoniae 0.106 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 24 PBP2X Streptococcus pneumoniae 2.048 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3413 PBP2X Streptococcus pneumoniae 0.429 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 2527 PBP2X Streptococcus pneumoniae 0.018 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3676 PBP2X Streptococcus pneumoniae 0.039 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3243 PBP2X Streptococcus pneumoniae 0.19 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3665 PBP2X Streptococcus pneumoniae 0.592 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3009 PBP2X Streptococcus pneumoniae 0.1 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 1076 PBP2X Streptococcus pneumoniae 0.059 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 1077 PBP2X Streptococcus pneumoniae 0.179 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 24 PBP2A Streptococcus pneumoniae 0.352 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3413 PBP2A Streptococcus pneumoniae 0.337 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 2527 PBP2A Streptococcus pneumoniae 0.059 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3676 PBP2A Streptococcus pneumoniae 0.115 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3665 PBP2A Streptococcus pneumoniae 0.233 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3009 PBP2A Streptococcus pneumoniae 0.054 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 1076 PBP2A Streptococcus pneumoniae 0.054 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 24 PBP2B Streptococcus pneumoniae 0.132 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3413 PBP2B Streptococcus pneumoniae 0.866 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 2527 PBP2B Streptococcus pneumoniae 0.062 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3676 PBP2B Streptococcus pneumoniae 0.396 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3243 PBP2B Streptococcus pneumoniae 0.066 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3665 PBP2B Streptococcus pneumoniae 0.651 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3009 PBP2B Streptococcus pneumoniae 0.046 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 1076 PBP2B Streptococcus pneumoniae 0.071 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 1077 PBP2B Streptococcus pneumoniae 0.046 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 24 PBP3 Streptococcus pneumoniae 0.2 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3413 PBP3 Streptococcus pneumoniae 0.195 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 2527 PBP3 Streptococcus pneumoniae 0.034 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3676 PBP3 Streptococcus pneumoniae 0.188 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3243 PBP3 Streptococcus pneumoniae 0.095 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3665 PBP3 Streptococcus pneumoniae 0.171 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 3009 PBP3 Streptococcus pneumoniae 0.039 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 1076 PBP3 Streptococcus pneumoniae 0.032 ug.mL-1
Displacement of Biocillin FL from Streptococcus pneumoniae 1077 PBP3 Streptococcus pneumoniae 0.219 ug.mL-1
Inhibition of Pseudomonas aeruginosa PAO1 PBP1b by SDS-PAGE Pseudomonas aeruginosa PAO1 0.13 ug.mL-1
Inhibition of Pseudomonas aeruginosa PAO1 PBP1c by SDS-PAGE Pseudomonas aeruginosa PAO1 0.08 ug.mL-1
Inhibition of Pseudomonas aeruginosa PAO1 PBP2 by SDS-PAGE Pseudomonas aeruginosa PAO1 0.08 ug.mL-1
Inhibition of Pseudomonas aeruginosa PAO1 PBP3 by SDS-PAGE Pseudomonas aeruginosa PAO1 0.12 ug.mL-1
Inhibition of Pseudomonas aeruginosa PAO1 PBP4 by SDS-PAGE Pseudomonas aeruginosa PAO1 0.02 ug.mL-1
Inhibition of Pseudomonas aeruginosa PAO1 PBP5/6 by SDS-PAGE Pseudomonas aeruginosa PAO1 0.2 ug.mL-1
Inhibition of recombinant human GABA A alpha2beta2gamma2 receptor expressed in CHO-K1 cells at 300 uM incubated at room temperature for 15 mins before the GABA addition fluorescence spectrometry Homo sapiens 15.0 %
Antiviral activity determined as inhibition of SARS-CoV-2 induced cytotoxicity of Caco-2 cells at 10 uM after 48 hours by high content imaging Homo sapiens 0.03 %
SARS-CoV-2 3CL-Pro protease inhibition percentage at 20µM by FRET kind of response from peptide substrate Severe acute respiratory syndrome coronavirus 2 10.2 %
Antiviral activity determined as inhibition of SARS-CoV-2 induced cytotoxicity of VERO-6 cells at 10 uM after 48 hours exposure to 0.01 MOI SARS CoV-2 virus by high content imaging Chlorocebus sabaeus -0.05 % Antiviral activity determined as inhibition of SARS-CoV-2 induced cytotoxicity of VERO-6 cells at 10 uM after 48 hours exposure to 0.01 MOI SARS CoV-2 virus by high content imaging Chlorocebus sabaeus -0.05 %

Cross References

Resources Reference
ChEBI 471744
ChEMBL CHEMBL148
DrugBank DB01598
DrugCentral 1426
FDA SRS Q20IM7HE75
Human Metabolome Database HMDB0015536
Guide to Pharmacology 10821
KEGG C06665
PharmGKB PA449968
PubChem 5282372
SureChEMBL SCHEMBL1649260
ZINC ZINC000004097225
ChEBI 51799
ChEMBL CHEMBL43708
FDA SRS 71OTZ9ZE0A
Guide to Pharmacology 10821
PubChem 5282372
SureChEMBL SCHEMBL5980