Structure

InChI Key DMJNNHOOLUXYBV-PQTSNVLCSA-N
Smiles C[C@@H](O)[C@H]1C(=O)N2C(C(=O)O)=C(S[C@@H]3CN[C@H](C(=O)N(C)C)C3)[C@H](C)[C@H]12
InChI
InChI=1S/C17H25N3O5S/c1-7-12-11(8(2)21)16(23)20(12)13(17(24)25)14(7)26-9-5-10(18-6-9)15(22)19(3)4/h7-12,18,21H,5-6H2,1-4H3,(H,24,25)/t7-,8-,9+,10+,11-,12-/m1/s1

Physicochemical Descriptors

Property Name Value
Molecular Formula C17H25N3O5S
Molecular Weight 383.47
AlogP -0.31
Hydrogen Bond Acceptor 6.0
Hydrogen Bond Donor 3.0
Number of Rotational Bond 5.0
Polar Surface Area 110.18
Molecular species ZWITTERION
Aromatic Rings 0.0
Heavy Atoms 26.0

Bioactivity

Mechanism of Action Action Reference
Bacterial penicillin-binding protein inhibitor INHIBITOR DailyMed
Targets EC50(nM) IC50(nM) Kd(nM) Ki(nM) Inhibition(%)
Enzyme Hydrolase
- - 11000 - -
Assay Description Organism Bioactivity Reference
Antimicrobial activity against methicillin-susceptible Staphylococcus aureus ATCC 25923 after phagocytosis by human THP1 macrophages assessed as reduction in bacterial count after 24 hrs Staphylococcus aureus 0.14 ug.mL-1
Antimicrobial activity against methicillin-resistant Staphylococcus aureus ATCC 25923 after phagocytosis by human THP1 macrophages assessed as reduction in bacterial count after 24 hrs Staphylococcus aureus 0.16 ug.mL-1
Antimicrobial activity against methicillin-susceptible Staphylococcus aureus ATCC 25923 after phagocytosis by human THP1 macrophages assessed as reduction in bacterial count at pH 7.4 after 24 hrs Staphylococcus aureus 0.29 ug.mL-1
Antimicrobial activity against methicillin-susceptible Staphylococcus aureus ATCC 25923 after phagocytosis by human THP1 macrophages assessed as reduction in bacterial count at pH 5.5 after 24 hrs Staphylococcus aureus 0.2 ug.mL-1
Antimicrobial activity against methicillin-susceptible Staphylococcus aureus ATCC 25923 after phagocytosis by human THP1 macrophages assessed as reduction in bacterial count at pH 5.5 after 24 hrs Staphylococcus aureus 0.33 ug.mL-1
Inhibition of Bocillin FL binding to PBP1A in Escherichia coli MC4100 membranes Escherichia coli 1.7 ug.mL-1
Inhibition of Bocillin FL binding to PBP1B in Escherichia coli MC4100 membranes Escherichia coli 1.3 ug.mL-1
Inhibition of Bocillin FL binding to PBP2 in Escherichia coli MC4100 membranes Escherichia coli 0.008 ug.mL-1
Inhibition of Bocillin FL binding to PBP3 in Escherichia coli MC4100 membranes Escherichia coli 0.6 ug.mL-1
Inhibition of Bocillin FL binding to PBP4 in Escherichia coli MC4100 membranes Escherichia coli 0.02 ug.mL-1
Inhibition of Bocillin FL binding to PBP5 in Escherichia coli MC4100 membranes Escherichia coli 4.0 ug.mL-1
Inhibition of Bocillin FL binding to PBP6 in Escherichia coli MC4100 membranes Escherichia coli 0.03 ug.mL-1
Inhibition of Bocillin FL binding to PBP1A in Pseudomonas aeruginosa PAO1 membranes Pseudomonas aeruginosa PAO1 0.5 ug.mL-1
Inhibition of Bocillin FL binding to PBP1B in Pseudomonas aeruginosa PAO1 membranes Pseudomonas aeruginosa PAO1 0.5 ug.mL-1
Inhibition of Bocillin FL binding to PBP2 in Pseudomonas aeruginosa PAO1 membranes Pseudomonas aeruginosa PAO1 0.05 ug.mL-1
Inhibition of Bocillin FL binding to PBP3 in Pseudomonas aeruginosa PAO1 membranes Pseudomonas aeruginosa PAO1 0.08 ug.mL-1
Inhibition of Bocillin FL binding to PBP4 in Pseudomonas aeruginosa PAO1 membranes Pseudomonas aeruginosa PAO1 0.008 ug.mL-1
Inhibition of Bocillin FL binding to PBP5/6 in Pseudomonas aeruginosa PAO1 membranes Pseudomonas aeruginosa PAO1 16.0 ug.mL-1
Inhibition of Bocillin FL binding to PBP1A in Pseudomonas aeruginosa 27853 membranes Pseudomonas aeruginosa PAO1 0.6 ug.mL-1
Inhibition of Bocillin FL binding to PBP1B in Pseudomonas aeruginosa 27853 membranes Pseudomonas aeruginosa PAO1 0.6 ug.mL-1
Inhibition of Bocillin FL binding to PBP2 in Pseudomonas aeruginosa 27853 membranes Pseudomonas aeruginosa PAO1 0.06 ug.mL-1
Inhibition of Bocillin FL binding to PBP3 in Pseudomonas aeruginosa 27853 membranes Pseudomonas aeruginosa PAO1 0.08 ug.mL-1
Inhibition of Bocillin FL binding to PBP4 in Pseudomonas aeruginosa 27853 membranes Pseudomonas aeruginosa PAO1 0.02 ug.mL-1
Inhibition of Bocillin FL binding to PBP5/6 in Pseudomonas aeruginosa 27853 membranes Pseudomonas aeruginosa PAO1 4.0 ug.mL-1
Binding affinity to PBP2a in methicillin-resistant Staphylococcus aureus 123-1 by [14C]benzylpenicillin labelled competitive assay Staphylococcus aureus 130.0 ug.mL-1
Binding affinity to PBP2a in methicillin-resistant Staphylococcus aureus 12386-1 by [14C]benzylpenicillin labelled competitive assay Staphylococcus aureus 53.0 ug.mL-1
PUBCHEM_BIOASSAY: Luminescence Microorganism-Based Dose Confirmation HTS to Identify Compounds Cytotoxic to SK(-)GAS Group A Streptococcus. (Class of assay: confirmatory) [Related pubchem assays: 1677 (Project Summary), 1662 (Primary HTS)] Streptococcus 153.0 nM
PUBCHEM_BIOASSAY: Luminescence Microorganism-Based Dose Confirmation HTS to Identify Inhibitors of Streptokinase Promotor Activity. (Class of assay: confirmatory) [Related pubchem assays: 1677 (Project Summary), 1662 (Primary HTS)] Streptococcus pyogenes M1 GAS 127.0 nM
Antibacterial activity against Staphylococcus aureus ATCC 6538P by microdilution method Staphylococcus aureus 0.06 ug.mL-1
Antibacterial activity against Escherichia coli NIHJ by microdilution method Escherichia coli 0.03 ug.mL-1
Antibacterial activity against Pseudomonas aeruginosa ATCC 15692 by microdilution method Pseudomonas aeruginosa 1.0 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP1 in Staphylococcus aureus ATCC 6538P Staphylococcus aureus 0.044 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP2 Staphylococcus aureus ATCC 6538P Staphylococcus aureus 0.26 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP3 in Staphylococcus aureus ATCC 6538P Staphylococcus aureus 130.0 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP4 in Staphylococcus aureus ATCC 6538P Staphylococcus aureus 0.071 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP1A in Escherichia coli NIHJ Escherichia coli 0.82 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP1B in Escherichia coli NIHJ Escherichia coli 0.77 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP2 in Escherichia coli NIHJ Escherichia coli 0.016 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP3 in Escherichia coli NIHJ Escherichia coli 0.39 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP4 in Escherichia coli NIHJ Escherichia coli 0.047 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP5 in Escherichia coli NIHJ Escherichia coli 1.2 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP6 Escherichia coli NIHJ Escherichia coli 15.0 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP1A in Pseudomonas aeruginosa ATCC 15692 Pseudomonas aeruginosa 0.12 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP1B in Pseudomonas aeruginosa ATCC 15692 Pseudomonas aeruginosa 0.11 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP2 in Pseudomonas aeruginosa ATCC 15692 Pseudomonas aeruginosa 0.018 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP3 in Pseudomonas aeruginosa ATCC 15692 Pseudomonas aeruginosa 0.013 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP4 in Pseudomonas aeruginosa ATCC 15692 Pseudomonas aeruginosa 0.0033 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP 5 in Pseudomonas aeruginosa ATCC 15692 Pseudomonas aeruginosa 4.5 ug.mL-1
Displacement of [14C]benzylpenicillin from PBP 6 in Pseudomonas aeruginosa ATCC 15692 Pseudomonas aeruginosa 4.5 ug.mL-1
Binding affinity to native signal deficient and TEV cleavage site containing His-tagged Klebsiella pneumoniae OXA-48 expressed in Escherichia coli assessed as dissociation rate constant by SPR assay Klebsiella pneumoniae 0.3463 /s
Binding affinity to native signal deficient and TEV cleavage site containing His-tagged Klebsiella pneumoniae OXA-48 expressed in Escherichia coli assessed as dissociation constant by SPR assay Klebsiella pneumoniae 850.0 nM
Antibacterial activity against Staphylococcus aureus MRSA ATCC 43300 (CO-ADD:GP_020); MIC in CAMBH media, using NBS plates, by OD(600) Staphylococcus aureus subsp. aureus -14.17 %
Antibacterial activity against Escherichia coli ATCC 25922 (CO-ADD:GN_001); MIC in CAMBH media using NBS plates, by OD(600) Escherichia coli 7.87 %
Antibacterial activity against Klebsiella pneumoniae MDR ATCC 70063 (CO-ADD:GN_003); MIC in CAMBH media using NBS plates, by OD(600) Klebsiella pneumoniae 0.03 %
Antibacterial activity against Pseudomonas aeruginosa ATCC 27853 (CO-ADD:GN_042); MIC in CAMBH media using NBS plates, by OD(600) Pseudomonas aeruginosa 8.16 %
Antibacterial activity against Acinetobacter baumannii ATCC 19606 (CO-ADD:GN_034); MIC in CAMBH media using NBS plates, by OD600 Acinetobacter baumannii 10.36 %
Antifungal activity against Candida albicans ATCC 90028 (CO-ADD:FG_001); MIC in YNB media using NBS plates, by OD630 Candida albicans 3.42 %
Antifungal activity against Cryptococcus neoformans H99 ATCC 208821 (CO-ADD:FG_002); MIC in YNB media using NBS plates, by Resazurin OD(600-570) Cryptococcus neoformans 2.76 %
Antiviral activity determined as inhibition of SARS-CoV-2 induced cytotoxicity of Caco-2 cells at 10 uM after 48 hours by high content imaging Homo sapiens 10.13 %
Antimicrobial activity against Candida albicans ATCC 90028 assessed as inhibition of microbial growth by CLSI based method Candida albicans 300.0 nM
Antimicrobial activity against Aspergillus fumigatus ATCC 90906 assessed as inhibition of microbial growth by CLSI based method Aspergillus fumigatus 300.0 nM
Antimicrobial activity against Cryptococcus neoformans ATCC 90113 assessed as inhibition of microbial growth by CLSI based method Cryptococcus neoformans 300.0 nM
Antimicrobial activity against methicillin-resistant Staphylococcus aureus ATCC 43300 assessed as inhibition of microbial growth by CLSI based method Staphylococcus aureus 10.0 nM
Antimicrobial activity against Escherichia coli ATCC 35218 assessed as inhibition of microbial growth by CLSI based method Escherichia coli 10.0 nM
Antimicrobial activity against Pseudomonas aeruginosa ATCC 27853 assessed as inhibition of microbial growth by CLSI based method Pseudomonas aeruginosa 20.0 nM
SARS-CoV-2 3CL-Pro protease inhibition percentage at 20µM by FRET kind of response from peptide substrate Severe acute respiratory syndrome coronavirus 2 10.85 % SARS-CoV-2 3CL-Pro protease inhibition percentage at 20µM by FRET kind of response from peptide substrate Severe acute respiratory syndrome coronavirus 2 -4.064 %
Antiviral activity determined as inhibition of SARS-CoV-2 induced cytotoxicity of VERO-6 cells at 10 uM after 48 hours exposure to 0.01 MOI SARS CoV-2 virus by high content imaging Chlorocebus sabaeus -0.09 % Antiviral activity determined as inhibition of SARS-CoV-2 induced cytotoxicity of VERO-6 cells at 10 uM after 48 hours exposure to 0.01 MOI SARS CoV-2 virus by high content imaging Chlorocebus sabaeus 0.12 % Antiviral activity determined as inhibition of SARS-CoV-2 induced cytotoxicity of VERO-6 cells at 10 uM after 48 hours exposure to 0.01 MOI SARS CoV-2 virus by high content imaging Chlorocebus sabaeus 0.12 % Antiviral activity determined as inhibition of SARS-CoV-2 induced cytotoxicity of VERO-6 cells at 10 uM after 48 hours exposure to 0.01 MOI SARS CoV-2 virus by high content imaging Chlorocebus sabaeus -0.09 %
Inhibition of bacterial NDM-1 expressed in Escherichia coli BL21 (DE3) at 20 uM using meropenem as substrate incubated for 1 hr by spectrometry analysis relative to control Bacteria 90.0 %

Related Entries

Cross References

Resources Reference
ChEBI 43968
ChEMBL CHEMBL127
DrugBank DB00760
DrugCentral 1709
FDA SRS YOP6PX0BAO
Human Metabolome Database HMDB0014898
Guide to Pharmacology 10829
PDB MEM
PubChem 441129
SureChEMBL SCHEMBL34442
ZINC ZINC000003808779