Structure

InChI Key IZEKFCXSFNUWAM-UHFFFAOYSA-N
Smiles OCCN(CCO)c1nc(N2CCCCC2)c2nc(N(CCO)CCO)nc(N3CCCCC3)c2n1
InChI
InChI=1S/C24H40N8O4/c33-15-11-31(12-16-34)23-26-20-19(21(27-23)29-7-3-1-4-8-29)25-24(32(13-17-35)14-18-36)28-22(20)30-9-5-2-6-10-30/h33-36H,1-18H2

Physicochemical Descriptors

Property Name Value
Molecular Formula C24H40N8O4
Molecular Weight 504.64
AlogP -0.02
Hydrogen Bond Acceptor 12.0
Hydrogen Bond Donor 4.0
Number of Rotational Bond 12.0
Polar Surface Area 145.44
Molecular species NEUTRAL
Aromatic Rings 2.0
Heavy Atoms 36.0

Bioactivity

Mechanism of Action Action Reference
3',5'-cyclic phosphodiesterase inhibitor INHIBITOR DailyMed Wikipedia PubMed
Protein: Equilibrative nucleoside transporter 1

Description: Equilibrative nucleoside transporter 1

Organism : Homo sapiens

Q99808 ENSG00000112759
Targets EC50(nM) IC50(nM) Kd(nM) Ki(nM) Inhibition(%)
Enzyme Phosphodiesterase Phosphodiesterase 1 Phosphodiesterase 1A
- 45000 - - -
Enzyme Phosphodiesterase Phosphodiesterase 1 Phosphodiesterase 1B
- 45000 - - -
Enzyme Phosphodiesterase Phosphodiesterase 1 Phosphodiesterase 1C
- 45000 - - -
Enzyme Phosphodiesterase Phosphodiesterase 10 Phosphodiesterase 10A
- - - 1000 -
Enzyme Phosphodiesterase Phosphodiesterase 11 Phosphodiesterase 11A
- - - 400 16-92
Enzyme Phosphodiesterase Phosphodiesterase 2 Phosphodiesterase 2A
- 3240-4000 - - -
Enzyme Phosphodiesterase Phosphodiesterase 3 Phosphodiesterase 3A
- 43000 - - -
Enzyme Phosphodiesterase Phosphodiesterase 3 Phosphodiesterase 3B
- 43000 - - -
Enzyme Phosphodiesterase Phosphodiesterase 4 Phosphodiesterase 4A
- 5270-6400 - - -
Enzyme Phosphodiesterase Phosphodiesterase 4 Phosphodiesterase 4B
- 500 - - -
Enzyme Phosphodiesterase Phosphodiesterase 4 Phosphodiesterase 4C
- 500 - - -
Enzyme Phosphodiesterase Phosphodiesterase 4 Phosphodiesterase 4D
- 500 - - -
Enzyme Phosphodiesterase Phosphodiesterase 5 Phosphodiesterase 5A
- 520-574 - - -
Enzyme Phosphodiesterase Phosphodiesterase 6 Phosphodiesterase 6A
- - - 125 -
Enzyme Phosphodiesterase Phosphodiesterase 6 Phosphodiesterase 6B
- - - 125 -
Enzyme Phosphodiesterase Phosphodiesterase 6 Phosphodiesterase 6C
- - - 125 -
Enzyme Phosphodiesterase Phosphodiesterase 6 Phosphodiesterase 6D
- - - 125 -
Enzyme Phosphodiesterase Phosphodiesterase 6 Phosphodiesterase 6G
- - - 125 -
Enzyme Phosphodiesterase Phosphodiesterase 6 Phosphodiesterase 6H
- - - 125 -
Enzyme Phosphodiesterase Phosphodiesterase 7 Phosphodiesterase 7A
- - - 600 -
Enzyme Phosphodiesterase Phosphodiesterase 7 Phosphodiesterase 7B
- - - 600 3-92
Enzyme Phosphodiesterase Phosphodiesterase 8 Phosphodiesterase 8A
- - - - 13-88
Enzyme
- 3240-4000 - 1000 13-88
Ion channel Voltage-gated ion channel Voltage-gated sodium channel
- - - - 18
Transcription factor Nuclear receptor Nuclear hormone receptor subfamily 3 Nuclear hormone receptor subfamily 3 group C Nuclear hormone receptor subfamily 3 group C member 4
- - - - 82
Transporter Electrochemical transporter SLC superfamily of solute carriers SLC21/SLCO family of organic anion transporting polypeptides
- - - - 89-92
Transporter Electrochemical transporter SLC superfamily of solute carriers SLC22 family of organic cation and anion transporters
- 2600 - - -
Transporter Electrochemical transporter SLC superfamily of solute carriers SLC28 and SLC29 families of nucleoside transporters SLC29 Facilitative nucleoside transporter family
- 145 - 8-9 87
Transporter Electrochemical transporter SLC superfamily of solute carriers SLC47 family of multidrug and toxin extrusion transporters
- 26000 - - -
Transporter Electrochemical transporter
- 145 - 8-9 89-92
Transporter Primary active transporter ATP-binding cassette ABCB subfamily
- 4000 - - 5
Transporter Primary active transporter ATP-binding cassette ABCC subfamily
- 8300 - - 95
Assay Description Organism Bioactivity Reference
Inhibition of [3H]thymidine uptake into L1210 cells at a concentration of 1 uM Mus musculus 89.0 %
Inhibition of [3H]thymidine uptake into L1210 cells at a concentration of 1 uM in the presence of 5 mg/mL of AGP (alpha1-acid glycoprotein) Mus musculus 4.0 %
Inhibition of phosphodiesterase 5 (PDE5) from porcine platelets, range 0.244-1.35 Sus scrofa 574.0 nM
Inhibition of Phosphodiesterase 4 (PDE4) from guinea pig macrophages Cavia porcellus 500.0 nM
Inhibition of binding of Batrachotoxinin [3H]BTX-B to high affinity sites on voltage dependent sodium channels in a vesicular preparation from guinea pig cerebral cortex at 10 uM Cavia porcellus 18.4 %
Displacement of 5-(SAENTA)-X8-fluorescein from K562 cell nucleoside transporter Homo sapiens 8.79 nM
Inhibitory activity against cyclic GMP-phosphodiesterase (PDE V) isolated from porcine aorta. Sus scrofa 520.0 nM
Inhibition of human phosphodiesterase 6 Homo sapiens 125.0 nM
Inhibition of human phosphodiesterase 7 Homo sapiens 600.0 nM
Inhibition of human phosphodiesterase 11 Homo sapiens 400.0 nM
Inhibition of [3H]thymidine uptake in L1210 cells Mus musculus 340.0 nM
Inhibition of [3H]thymidine uptake in L1210 cells at 1 uM Mus musculus 80.0 %
Inhibition of [3H]thymidine uptake in L1210 cells at 10 uM Mus musculus 99.0 %
Inhibition of [3H]thymidine uptake in L1210 cells in the presence of 5 mg/mL human AGP at 1 uM Mus musculus 4.0 %
Inhibition of [3H]-thymidine uptake in L1210 cells in the presence of 5 mg/mL human AGP at 10 uM Mus musculus 13.0 %
Inhibition of ENT1 in human K562 cells at 10 uM by flow cytometric assay Homo sapiens 86.7 %
Inhibition of ENT1 in human K562 cells by flow cytometric assay Homo sapiens 144.8 nM Inhibition of ENT1 in human K562 cells by flow cytometric assay Homo sapiens 8.18 nM
Activity at androgen receptor ligand binding domain assessed as inhibition of SRC2-3 interaction at 50 uM after 2 hrs by fluorescence polarization assay None 82.0 %
Inhibition of ENT-mediated [3H]thymidine incorporation in human COR-L23 cells by liquid scintillation counting Homo sapiens 15.0 nM
Inhibition of ENT-mediated [3H]thymidine incorporation in human COR-L23 cells at 0.1 uM by liquid scintillation counting Homo sapiens 78.0 %
Inhibition of ENT-mediated [3H]thymidine incorporation in human COR-L23 cells at 1 uM by liquid scintillation counting Homo sapiens 96.0 %
DRUGMATRIX: Sodium/nucleoside co-transporter radioligand binding (ligand: nitrobenzylthioinosine) Cavia porcellus 83.0 nM DRUGMATRIX: Sodium/nucleoside co-transporter radioligand binding (ligand: nitrobenzylthioinosine) Cavia porcellus 29.0 nM
DRUGMATRIX: GABAA, Flunitrazepam, Central radioligand binding (ligand: [3H] Flunitrazepam) Rattus norvegicus 382.0 nM DRUGMATRIX: GABAA, Flunitrazepam, Central radioligand binding (ligand: [3H] Flunitrazepam) Rattus norvegicus 311.0 nM
Inhibition of His-tagged catalytic domain Trypanosoma brucei brucei PDEB1 expressed in baculovirus infected insect Sf21 cells at 100 uM Trypanosoma brucei 50.0 %
Inhibition of ABCC5 in human erythrocytes assessed as inhibition of ATP-mediated [3H]cGMP uptake in inside-out vesicles at 32 uM after 60 mins by liquid scintillation counting Homo sapiens 95.0 %
Inhibition of norA-mediated ethidium bromide efflux in Staphylococcus aureus SA-1199B harboring grlA A116E mutant at 50 uM after 5 mins by fluorometric analysis Staphylococcus aureus 42.3 %
Inhibition of human recombinant MDR1 expressed in mouse L5178Y cells assessed as inhibition of rhodamine-123 efflux at 10'-4 M preincubated for 10 mins measured after 20 mins by FACS analysis Homo sapiens 4.7 %
Inhibition of p-glycoprotein-mediated calcein-AM efflux None 90.0 %
Inhibition of human prune assessed as reduction of cAMP-phosphodiesterase activity Homo sapiens 780.0 nM
Inhibition of human liver OATP1B1 expressed in HEK293 Flp-In cells assessed as reduction in E17-betaG uptake at 20 uM by scintillation counting Homo sapiens 91.9 %
Inhibition of human liver OATP1B3 expressed in HEK293 Flp-In cells assessed as reduction in [3H]E17-betaG uptake at 20 uM incubated for 5 mins by scintillation counting Homo sapiens 91.8 %
Inhibition of human liver OATP2B1 expressed in HEK293 Flp-In cells assessed as reduction in [3H]E3S uptake at 20 uM incubated for 5 mins by scintillation counting Homo sapiens 83.1 %
Inhibition of mouse Ido2 transfected in HEK293T cells using L-tryptophan as substrate assessed as kynurenine formation at 20 uM after 45 mins by spectrophotometric analysis relative to control Mus musculus 55.0 %
Inhibition of sodium fluorescein uptake in OATP1B1-transfected CHO cells at an equimolar substrate-inhibitor concentration of 10 uM Cricetulus griseus 312.58 %
Inhibition of sodium fluorescein uptake in OATP1B3-transfected CHO cells at an equimolar substrate-inhibitor concentration of 10 uM Cricetulus griseus 89.24 %
Antibacterial activity against Staphylococcus aureus MRSA ATCC 43300 (CO-ADD:GP_020); MIC in CAMBH media, using NBS plates, by OD(600) Staphylococcus aureus subsp. aureus -23.93 %
Antibacterial activity against Escherichia coli ATCC 25922 (CO-ADD:GN_001); MIC in CAMBH media using NBS plates, by OD(600) Escherichia coli 7.34 %
Antibacterial activity against Klebsiella pneumoniae MDR ATCC 70063 (CO-ADD:GN_003); MIC in CAMBH media using NBS plates, by OD(600) Klebsiella pneumoniae 2.81 %
Antibacterial activity against Pseudomonas aeruginosa ATCC 27853 (CO-ADD:GN_042); MIC in CAMBH media using NBS plates, by OD(600) Pseudomonas aeruginosa 9.85 %
Antibacterial activity against Acinetobacter baumannii ATCC 19606 (CO-ADD:GN_034); MIC in CAMBH media using NBS plates, by OD600 Acinetobacter baumannii 12.25 %
Antifungal activity against Candida albicans ATCC 90028 (CO-ADD:FG_001); MIC in YNB media using NBS plates, by OD630 Candida albicans 2.59 %
Antifungal activity against Cryptococcus neoformans H99 ATCC 208821 (CO-ADD:FG_002); MIC in YNB media using NBS plates, by Resazurin OD(600-570) Cryptococcus neoformans 5.59 %
Antiviral activity determined as inhibition of SARS-CoV-2 induced cytotoxicity of Caco-2 cells at 10 uM after 48 hours by high content imaging Homo sapiens 10.45 %
Inhibition of recombinant N-terminal GST tagged and C-terminal His-tagged human PDE7B (109-ens aa) expressed in Sf9 cells using FAM-cAMP as substrate at 0.1xIC50 incubated for 60 mins by fluorescence plate reader analysis Homo sapiens 3.0 %
Inhibition of recombinant N-terminal GST-tagged full length human PDE8A1 expressed in Sf9 cells using FAM-cAMP as substrate at 0.1xIC50 incubated for 60 mins by fluorescence plate reader analysis Homo sapiens 13.0 %
Inhibition of recombinant N-terminal GST-tagged full length human PDE11A4 expressed in Sf9 cells using FAM-cAMP as substrate at 0.1xIC50 incubated for 60 mins by fluorescence plate reader analysis Homo sapiens 16.0 %
Inhibition of recombinant N-terminal GST tagged and C-terminal His-tagged human PDE7B (109-ens aa) expressed in Sf9 cells using FAM-cAMP as substrate at 1xIC50 incubated for 60 mins by fluorescence plate reader analysis Homo sapiens 48.0 %
Inhibition of recombinant N-terminal GST-tagged full length human PDE8A1 expressed in Sf9 cells using FAM-cAMP as substrate at 1xIC50 incubated for 60 mins by fluorescence plate reader analysis Homo sapiens 55.0 %
Inhibition of recombinant N-terminal GST-tagged full length human PDE11A4 expressed in Sf9 cells using FAM-cAMP as substrate at 1xIC50 incubated for 60 mins by fluorescence plate reader analysis Homo sapiens 57.0 %
Inhibition of recombinant N-terminal GST tagged and C-terminal His-tagged human PDE7B (109-ens aa) expressed in Sf9 cells using FAM-cAMP as substrate at 10xIC50 incubated for 60 mins by fluorescence plate reader analysis Homo sapiens 92.0 %
Inhibition of recombinant N-terminal GST-tagged full length human PDE8A1 expressed in Sf9 cells using FAM-cAMP as substrate at 10xIC50 incubated for 60 mins by fluorescence plate reader analysis Homo sapiens 88.0 %
Inhibition of recombinant N-terminal GST-tagged full length human PDE11A4 expressed in Sf9 cells using FAM-cAMP as substrate at 10xIC50 incubated for 60 mins by fluorescence plate reader analysis Homo sapiens 92.0 %
SARS-CoV-2 3CL-Pro protease inhibition percentage at 20µM by FRET kind of response from peptide substrate Severe acute respiratory syndrome coronavirus 2 -1.034 %
Antiviral activity determined as inhibition of SARS-CoV-2 induced cytotoxicity of VERO-6 cells at 10 uM after 48 hours exposure to 0.01 MOI SARS CoV-2 virus by high content imaging Chlorocebus sabaeus 0.24 % Antiviral activity determined as inhibition of SARS-CoV-2 induced cytotoxicity of VERO-6 cells at 10 uM after 48 hours exposure to 0.01 MOI SARS CoV-2 virus by high content imaging Chlorocebus sabaeus 0.24 %

Cross References

Resources Reference
ChEBI 4653
ChEMBL CHEMBL932
DrugBank DB00975
DrugCentral 924
FDA SRS 64ALC7F90C
Human Metabolome Database HMDB0015110
Guide to Pharmacology 4807
PharmGKB PA449367
PubChem 3108
SureChEMBL SCHEMBL16119
ZINC ZINC000000643046